​植物科學研究所

Hsieh J.A., Liou P.C., Lin C.C., Dai X., Hu C.W., Wang I.F., Dang J.F., Ho Y.C., Cheng K.W., Xu W., Kuo S.C., Kao C.T., Yang D.X., Wang R., Xiao K., Lin J.S., Hsu C.C., Hsu C.C., Mai T.L., Cheng Y., Tseng M.C., Li W.*, Chen Y.L.*, Lin Y.J.* (2025) Single-cell and spatial multiomics identifies heterogeneous xylem development driven by mechanical stress in Populus. Developmental Cell (* co-corresponding author) (5yr IF=11.4; R/C=2/39(5.2%), DEVELOPMENTAL BIOLOGY).

Kao C.T., Yang F.W., Wu M.C., Hung T.H., Hu C.W., Chen C.H., Liou P.C., Mai T.L., Chang C.C., Lin T.Y., Chen Y.L.*, Lin Y.J.*, Su J.C.* (2024) Systematic synthesis, identification and application of monolignol pathway metabolites New Phytologist 244: 1143-1167 (* co-corresponding author) (5yr IF=10.3; R/C=12/273(4.4%), PLANT SCIENCES).

Chen Y.L.*, Hsieh J.A., Kuo S.C., Kao C.T., Tung C.C., Yu J.H., Chang T.H., Ku C., Xie J., Zhang D., Li Q., Lin Y.J.* (2024) Merit of integrating in situ transcriptomics and anatomical information for precision cell annotation and lineage construction in single-cell analyses. Genome Biology 25:85 (* co-corresponding author) (5yr IF=17.4; R/C=5/171(2.92%), GENETICS & HEREDITY).

Li W.*, Lin Y.J.*, Chen Y.L., Zhou C., Li S., Ridder N., Oliveira D., Zhang L., Zhang B., Wang J.P., Xu C., Fu X., Luo K., Wu A.M., Demura T., Lu M.Z., Zhou Y., Li L., Umezawa T., Boerjan W., Chiang V.L. (2024) Woody Plant Cell Walls: Fundamental and Utilization. Molecular Plant 17: 112-140 (* co-first author) (5yr IF=22.6; R/C=1/239 (0.8%), PLANT SCIENCES).

Tung C.C., Kuo S.C., Yang C.L., Yu J.H., Huang C.E., Liou P.C., Sun Y.H., Shuai P., Su J.C., Ku C.*, Lin Y.J.* (2023)Single-cell transcriptomics unveils xylem cell development and evolution. Genome Biology 24:3 (IF=18.010; R/C=4/175(2.00%), GENETICS & HEREDITY) (* co-corresponding author).

Tsai N.C., Hsu T.S., Kuo S.C., Kao C.T., Hung T.H., Lin D.G., Yeh C.S., Chu C.C., Lin J.S., Lin H.H., Ko C.Y., Chang T.H.*, Su J.C.*, and Lin Y.J.* (2021) Large-scale data analysis for robotic yeast one-hybrid platforms and multi-disciplinary studies using GateMultiplex. BMC Biology 19:214 (IF=7.431; R/C=7/93 (7.52%), BIOLOGY) (* co-corresponding author)

Yeh C.S., Wang Z., Miao F., Ma H., Kao C.T., Hsu T.S., Yu J.H., Hung E.T., Lin C.C., Kuan C.Y., Tsai N.C., Zhou C., Qu G.Z., Jiang J., Liu G., Wang J.P., Li W.*, Chiang V.L.*, Chang T.H.*, Lin Y.J.* (2019) A Novel Synthetic-Genetic-Array Based Yeast One-Hybrid System for High Discovery Rate and Short Processing Time. Genome Research 29, 1343-1351(IF=11.093; R/C=8/174(4.31%), GENETICS & HEREDITY) (* co-corresponding author)

Li S.*, Lin Y.J.* (co-first author), Wang P., Zhang B., Li M., Chen S., Shi R., Tunlaya-Anukit S., Liu X., Wang Z., Dai X., Yu J., Zhou C., Liu B., Wang J.P., Chiang V.L., Li W. (2019) Histone Acetylation Cooperating with AREB1 Transcription Factor Regulates Drought Response and Tolerance in Populus trichocarpa. Plant Cell 31, 663-686  (IF=8.631; R/C=6/228(2.6%), PLANT SCIENCES).

Lin Y.J.*, Chen H.*, Li Q.*, Shi R., Tunlaya-Anukit S., Shuai P., Li W., Li H., Sun Y.H., Sederoff R.R., Chiang V.L. (2017). Reciprocal cross-regulation of VND and SND multi-gene TF families in wood formation in Populus trichocarpa. PNAS 114, E9722-E9729 (* co-first author) (IF=9.7; R/C=4/64(6.3%), MULTIDISCIPLINARY SCIENCES).

Lin, Y., Li, W., Li, Q., Chen, H., Sederoff, R.R., and Chiang, V.L. (2014). A simple improved-throughput xylem protoplast system for studying wood formation. Nature Protocols 9, 2194-2205. (IF= 9.6; R/C=2/79 (2.53%), BIOCHEMICAL RESEARCH METHODS).

Lin, Y.*, Li, W.*, Sun, Y.H., Kumari, S., Wei, H.R., Li, Q.Z., Tunlaya-Anukit, S., Sederoff, R.R., and Chiang, V.L. (2013). SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa. Plant Cell 25, 4324-4341. (* Co-first author). (IF=9.6; R/C=4/204 (1.96%), PLANT SCIENCES).

Li Q.*, Lin Y.* (co-first author), Sun Y. H., Song J., Chen H., Zhang X. H., Sederoff R. R., and Chiang V. L. (2012). Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa. PNAS 109, 14699-14704. (IF=9.7; R/C=4/57 (7.01%), MULTIDISCIPLINARY SCIENCES).