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• Use of 16S rRNA gene sequences to identify cyanobacteria that can grow in far-red light. ​Molecular Ecology Resources,  00,  1–15. (2023) Ko, J.-T.,  Li, Y.-Y.,  Chen, P.-Y.,  Liu, P.-Y., &  Ho, M.-Y. 

• Hydrogen peroxide regulates the Osa-miR156-OsSPL2/OsTIFY11B module in rice.  Plant, Cell and Environment 46, 2507-2522. (2023) ​Tseng, B.-S., Huang, C.-C., King , Y.-C., Wu, M.-T., Hsieh, C.-H., Hsieh, K,-T., Hsing, Y.-I., Jeng., S,-T,*  

• Involvement of microRNA164 in responses to heat stress in Arabidopsis.  Plant Science, 329: 111598. (2023) Tsai, W.-A., Sung, P.-H., Kuo, Y.-W., Chen, M.-C., Jeng, S.-T.*, Lin, J.-S.*

• Arabidopsis FIN219/JAR1 interacts with phytochrome a under far-red light and jasmonates in regulating hypocotyl elongation via a functional demand manner. (2023)  PLOS Genetics 19(5): e1010779. Jiang HW, Peng KC, Hsu TY, Chiou YC, Hsieh HL*

• Calcium-dependent protein kinase CDPK16 phosphorylates serine-856 of glutamate receptor-like GLR3.6 protein leading to salt-responsive root growth in Arabidopsis. (2023)  Frontiers in Plant Science 14: 1093472. Silamparasan D., Chang I.F., and Jinn T.L.*

• Identification of a far-red light-inducible promoter that exhibits light intensity dependency and reversibility in a cyanobacterium. (2023) ACS Synth. Biol.accepted.  Liu T-S*, Wu K-F*, Jiang H-W, Chen K-W, Nien T-S, Bryant DA, Ho M-Y.  (*co-first author)

• Use of quartz sand columns to study far-red light photoacclimation (FaRLiP) in cyanobacteria.  (2022) Appl. Environ. Microbiol. 88, e00562-22. Nien T-S, Bryant DA, Ho M-Y 

• Arabidopsis histone H3 lysine 9 methyltransferases KYP/SUVH5/6 are involved in leaf development by interacting with AS1-AS2 to repress KNAT1 and KNAT2. (2023) Commun. Biol., 6:219. Hung, F.Y., Feng, Y.R., Hsin, K.T., Shih, Y.H., Chang, C.H., Zhong, W., Lai, Y.C., Xu, Y., Yang, S., Sugimoto, K., Cheng, Y.S., Wu, K.*

• FAR-RED INSENSITIVE 219 and phytochrome B corepress shade avoidance via modulating nuclear speckle formation. Plant Physiology.(2023) Kai-Chun Peng, Wei Siao and Hsu-Liang Hsieh* 

• Single-cell transcriptomics unveils xylem cell development and evolution.  Genome Biology. (2023) Chia-Chun Tung, Shang-Che Kuo, Chia-Ling Yang, Jhong-He Yu, Chia-En Huang, Pin-Chien Liou, Ying-Hsuan Sun, Peng Shuai, Jung-Chen Su, Chuan Ku & Ying-Chung Jimmy Lin.

• Allopatric Lineage Divergence of the East Asian Endemic Herb Conandron ramondioides Inferred from Low-Copy Nuclear and Plastid Markers. (2022) Int. J. Mol. Sci. 23:14932. Hsin, K.T., Kuo, H.C., Kokubugata, G., Möller, M., Wang, C.N.*, Cheng, Y.S.*

• Transcriptome analysis reveals the mechanisms for mycorrhiza-enhanced salt tolerance in rice. Frontiers in Plant Science (2022) Hsieh C, Chen YH, Chang KC and Yang SY*

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• Inducible chemical defenses in wild mungbean confer resistance to Spodoptera litura and possibly at the expense of drought tolerance Environmental and Experimental Botany (22 October 2022). Chen, Y.-J., Cheah, B.H., Lin, C.-Y., Ku, Y.-T., Kuo, C.-H., Zhang, Y.-Y., Chen, B.-R., Nean, O., Hsieh, C.-H., Yeh, P.-M., Yeo, F.K.S., Ling, Y.-P., Chuang, W.-P., Lee, C.-R., Ting, H.-M.*

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• WRKY63 transcriptional activation of COOLAIR and COLDAIR regulates vernalization-induced flowering. Plant Physiol (2022). Hung F-Y, Shih Y-H, Lin P-Y, Feng Y-Ru, Li C and Wu K*

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• HISTONE DEACETYLASE 15 and MOS4-Associated Complex subunits 3A/3B coregulate intron retention of ABA-responsive genes. Plant Physiol (2022). Tu Y-T, Chen C-Y, Huang Y-S, Chang C-H, Yen M-R, Hsieh J-W A, Chen P-Y, Wu K*

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• Arbuscular mycorrhizal symbiosis enhances tomato lateral root formation by modulating CEP2 peptide expression. New Phytol. 31 March 2022.Hsieh, Y.-H., Wei, Y.-H., Lo, J.-C., Pan, H.-Y. and Yang, S.-Y.*

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• Insight into the Phylogeny and Binding Ability of WRKY Transcription Factors.

Int. J. Mol. Sci. 7 March 2022. Hsin, K.T., Hsieh, M.C., Lee, Y.H., Lin, K.C., Cheng, Y.S.*

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• Impacts of Mn, Fe, and Oxidative Stressors on MnSOD Activation by AtMTM1 and AtMTM2 in Arabidopsis.​ Plants. 24 February 2022.Hu S.-H. Hu and Jinn T.-L.*

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• Guard Cell-Specific Pectin METHYLESTERASE53 Is Required for Abscisic Acid-Mediated Stomatal Function and Heat Response in Arabidopsis.

Front. Plant Sci., 21 February 2022.

Wu H.-C., Yu S.-Y., Wang Y.-D. and Jinn T.-L.*

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• Screening Three Single-copy Nuclear Markers to Infer Population Divergence in Conandron ramondioides (Gesneriaceae).

Journal of the National Taiwan Museum. December 2021.

Hsin, K.T., Wang, C.N., Cheng, Y.S.*

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• CFM6 is an Essential CRM Protein Required for the Splicing of nad5 Transcript in Arabidopsis Mitochondria.

Plant and Cell Physiology, pcab161, 10 November 2021.

Lin, W.-C., Chen, Y.-H., Gu, S.-Y., Shen, H.-L., Huang, K.-C., Lin, W.-D., Chang, M.-C., Chang, I.-F.* , Hong, C.-Y., Cheng, W.-H.

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• Arabidopsis glutamate receptor GLR3.7 is involved in abscisic acid response.

Plant Signal Behav. 2021 Nov 12:1997513.

Chen, P.Y., Hsu C.Y., Lee C.E., Chang I.F.*

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• Significance of AtMTM1 and AtMTM2 for Mitochondrial MnSOD Activation in Arabidopsis.

Front. Plant Sci., 06 August 2021

Hu, S.-H., Lin, S.-F., Huang, Y.-C., Huang, C.-H., Kuo, W.-Y. and Jinn, T.-L.*

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• Ecological factors influence balancing selection on leaf chemical profiles of a wildflower.

Nat. Ecol. Evol. 17 June 2021

Carley, L.N., Mojica, J.P., Wang, B., Chen, C.-Y., Lin, Y.-P., Prasad, K.V.S.K., Chan, E., Hsu, C.-W., Keith, R., Nuñez, C.L., Olson-Manning, C.F., Rushworth, C.A., Wagner, M.R., Wang, J., Yeh, P.-M., Reichelt, M., Ghattas, K., Gershenzon, J., Lee, C.-R.*, and Mitchell-Olds, T.

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• Phylogenetic and Structural Analysis of NIN-Like Proteins With a Type I/II PB1 Domain That Regulates Oligomerization for Nitrate Response.

Front. Plant Sci. 12:672035. 31 May 2021​

Hsin, K.T., Yang, T.J., Lee, Y.H. and Cheng, Y.S.*​

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• A novel thylakoid-less isolate fills a billion-year gap in the evolution of Cyanobacteria.

Curr. Biol. 13 May 2021

Rahmatpour N. , Hauser D.A. , Nelson J.M. , Chen P.Y. , Villarreal A. J. C. , Ho M.-Y.*, Li F.-W.

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• ​Inhibitor development of MTH1 via high-throughput screening with fragment based library and MTH1 substrate binding cavity.

Bioorg. Chem. Volume 110, May 2021, 104813

Peng Cheng, Li Y.-H., Yu C.W., Cheng Z.-H., Liu J.-R., Hsu J.-L., Hsin L.-W., Huang C.-T., Juan H.-F., Chern J.-W., Cheng Y.-S.*

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• An effective computational‐screening strategy for simultaneously improving both catalytic activity and thermostability of α‐l‐rhamnosidase.

Biotechnol. Bioeng. 20 March 2021

Li Lijun, Li Wenjing, Gong Jianye, Xu Yanyan, Wu Zheyu, Jiang Zedong, Cheng Y.‐S., Li Qingbiao, Ni Hui

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• The Arabidopsis histone demethylase JMJ28 regulates CONSTANS by interacting with FBH transcription factors.

Plant Cell, koab014, 25 January 2021

Hung F.Y., Lai Y.C., Wang J., Feng Y.R., Shih Y.H., Chen J.H., Sun H.C., Yang S.*, Li C.*, Wu K.*

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• Sensitive and Specific Cadmium Biosensor Developed by Reconfiguring Metal Transport and Leveraging Natural Gene Repositories.

ACS Sens. 6:995-1002. January 14, 2021

He M.-Y., Lin Y.-J., Kao Y.-L.,Kuo P.,Grauffel C., Lim C.,Cheng Y.-S., Chou H.-H. David*

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• Elucidation of enzymes involved in the biosynthetic pathway of bioactive polyacetylenes in Bidens pilosa using integrated omics approaches.

J. Exp. Bot. eraa457, 16 October 2020​.

Chung, H.-H.#, Ting, H.-M.#, Wang, W.-H., Chao, Y.-T., Hsieh, C.-H., Apaya, M.K., Sung, Y.-C., Lin, S.-S., Hwu, F.-Y., and Shyur, L.-F. (# Co-first author).

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• The expression of long non-coding RNAs is associated with H3Ac and H3K4me2 changes regulated by the HDA6-LDL1/2 histone modification complex in Arabidopsis.

NAR Genom. Bioinform., Vol. 2, Issue 3, September 2020.

Hung F.-Y. , Chen C., Yen M.-R., Hsieh J.-W. A., Li C., Shih Y.-H., Chen F.-F., Chen P.-Y., Cui Y., Wu K.*

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• Structure of Arabidopsis HISTONE DEACETYLASE15.

Plant Physiol​. Sep 2020.

Chen, C.-Y., Tu, Y.-T., Hsu, J.-C., Hung, H.-C., Liu, T.-C., Lee, Y.-H., Chou, C.-C., Cheng, Y.-S.*, and Wu, K.*

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• Structural insights into Arabidopsis ethylene response factor 96 with an extended N-terminal binding to GCC box.

Plant Mol Biol. Aug 2020.

Chen, C.-Y., Lin, P.-H., Chen, K.-H. Cheng, Y.-S.*

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• HDA6 dependent chromatin deacetylation orchestrates mRNA polyadenylation.

Genome Res. Aug 2020.​

Lin, J., Hung, F.-Y., Ye, C., Hong, L., Shih, Y.-H., Wu, K.*, and Li, Q.Q.

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• Regulation of micoRNA2111 and its target IbFBK in sweet potato on wounding

Plant Sci. March 2020, 110391

Weng S.-T., Kuo Y.-W., King Y.-C., Lin H.-H., Tu P.-Y., Tung K.-S., Jeng S.-T.*

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• Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of nonclassic domestication.

P.N.A.S. Jun 2020, 117 (25) 14543-14551

Matsumura H., Hsiao M.-C., Lin Y.-P., Toyoda A., Taniai N., Tarora K., Urasaki N., Anand S. S. , Dhillon N. P. S. , Schafleitner R., Lee C.-R.*

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• Glucosinolate Transporter1 involves in salt-induced jasmonate signaling and alleviates the repression of lateral root growth by salt in Arabidopsis.

Plant Sci. 2020 August.​

Kuo H-Y, Kang F-C, Wang Y-Y.*

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